Moreover, the expression of the gene encoding ��24 in E. coli is regulated by the stringent response. The possible Afatinib order role of ��24 on the Inhibitors,Modulators,Libraries expression of gluQ rs under osmotic stress might be interesting to study. GluQ RS is an enzyme responsible for the formation of the GluQ tRNA modification, and two independent groups have shown that this enzyme required a high concentration of glutamate to be activated and transferred to the queuosine base present on the tRNAAsp. Interestingly, one of Inhibitors,Modulators,Libraries the first events to occur when bacteria are subject to high osmolyte stress is an increase in glutamate levels within the cytoplasm. Our observation indicates an important role of the tRNA modification for the growth of S. flexneri in the presence of osmolytes. Other tRNA modifications might play a similar role in this stress condition.

Inhibitors,Modulators,Libraries In E. coli, inactivation of the yfiC gene, responsible for the modification at the adenosine 37 present on the tRNAVal, leads to a high sensitivity to osmotic stress. Transcription of gluQ rs is regulated by a terminator The results obtained in the present work show the pres ence of a terminator and suggested the functionality of this structure. To our knowledge, there are few examples of bacterial genes that have simi lar structures. There is a terminator structure upstream of the DNA primase gene, dnaG, which also has an un usual Shine Dalgarno sequence. Another example is the recX gene in E. coli, where readthrough accounts for approximately 10% of its transcription.

The two characteristics of gluQ rs described Inhibitors,Modulators,Libraries in this work, co transcription with the upstream gene and the presence of a terminator immediately upstream, allow us to propose that both the transcription and translation process could be regulated in the gluQ rs gene. It has been described, that the presence of terminators up stream of the coding region might be part of a regula tory system such as a riboswitch. Inhibitors,Modulators,Libraries Riboswitches for genes involved in queuosine formation have been described, in which the precursor preQ1 is the ligand of the mRNA structure. Using the riboswitch server, we did not identify any potential riboswitch. However we can not discount that the terminator described here might be part of a regulatory circuit similar to a riboswitch, or that an unidentified protein might bind the termin ator structure.

GluQ modification and codon bias tRNA modifications present at the anticodon loop might be important Enzastaurin MM for the accuracy of codon reading during the translation processes. Morris et al, 1999 proposed, based on molecular modeling, that the tRNAAspQ34 might improve recognition of both GAC and GAU codons, consequently the interaction of the codon GAU with the anticodon of tRNAAspG34 could be less efficient. In fact, in S. flexneri there are a few genes such as sitA, virF and proX that have a bias toward those codons that favor the modified tRNA.