All root canals were instrumented at the apical foramen up to a hand #25 K-type file in alternating rotation motions under continuous irrigation with running water. The smear layer was removed by using 17% EDTA for 3 minutes followed by 2.5% NaOCl irrigation. Selleck MAPK Inhibitor Library Irrigation was performed using a NaviTip needle (Ultradent, South Jordan, UT) placed as much apically as possible to ensure that the irrigants reached the entire extent of the canal. After the inactivation of residual NaOCl with 10% sodium thiosulfate, the teeth were immersed in trypticase soy broth (TSB) (Difco, Detroit, MI), ultrasonicated for 1 minute to release

entrapped air and allow penetration of culture media into root canal irregularities, and then sterilized in an autoclave for 20 minutes at 121°C. Each flask contained 10 teeth immersed in 200 mL TSB. The experiment was planned so that 10 specimens could be prepared and the respective bacteriological samples processed per day. E. faecalis strain

ATCC 29212 was used to infect the root canals. A suspension was prepared DZNeP order by adding 1 mL of a pure culture of E. faecalis grown in TSB for 24 hours to 5 mL of fresh TSB. One milliliter of this suspension was used to inoculate each of the flasks. E. faecalis was allowed to grow for 30 days at 37°C under gentle shaking. Culture media was replenished every week. Afterwards, all teeth had the excess of culture medium dripped off and their external root surface wiped with sterile gauze. Four teeth were

processed for scanning electron microscopic (SEM) analysis to confirm bacterial colonization and biofilm formation. These 4 teeth were fixed in 10% buffered formalin, longitudinally split, dried in ascending ethanol concentrations, dehydrated to their critical point in CO2, and then sputter-coated with gold under vacuum. SEM analysis was performed using a JEOL microscope (model JSM-5800LV; JEOL, Tokyo, Japan). The other 50 teeth had their apical foramen sealed with a fast set epoxy resin in order to prevent apical bacterial leakage and also to create a closed-end channel that produces the vapor lock effect (23). To make both handling and identification easier, teeth were mounted vertically Dipeptidyl peptidase up to the cervical region in blocks made of a silicone impression material (President Jet; Coltène AG, Cuyahoga Falls, OH). The tooth crown, including the pulp chamber walls, and the silicone surface were disinfected with 2.5% NaOCl followed by inactivation of this substance with 10% sodium thiosulfate. Next, the working length (WL) was determined by introducing a #20 K-file in the canal until it reached the apical foramen. The initial (S1) sample was then taken from each canal (see later). Root canals were instrumented using BioRaCe instruments (FKG Dentaire, La Chaux-de-Fonds, Switzerland). Canals were prepared at the WL by using the BR2 instrument (25/04; size/taper) up to the BR5 instrument (40/04) with 2.